All Publications before cE3c affiliation


17) Sousa VC, Peischl S, Excoffier L (2014) Impact of range expansions on current human genomic diversity. Current Opinion in Genetics & Development, 29, 22-30

16) Excoffier L, Dupanloup I, Huerta-Sánchez E, Sousa VC, Foll M (2013) Robust demographic inference from genomic and SNP data. PLOS Genetics, 9 (10): e1003905.

15) Sousa VC, Hey J (2013) Understanding the origin of species with genome-scale data: modelling gene flow. Nature Reviews Genetics, 14(6): 404-414.

14) Sousa VC, Carneiro M, Ferrand N, Hey J (2013) Identifying loci under selection against gene flow in isolation-with-migration models. Genetics, 194 (1): 211-233.

13) Salmona J, Salamolard M, Fouillot D, Ghestemme T, Larose J, Centon J-F, Sousa VC, Dawson DA, Thebaud C, Chikhi L (2012) Signature of a pre-human population decline in the critically endangered Reunion Island endemic forest bird Coracina newtoni. PLOS One, 7(8): e43524.

12) Rasteiro R, Bouttier P-A, Sousa VC, Chikhi L (2012) Investigating sex-biased migration during the Neolithic transition in Europe, using an explicit spatial simulation framework. Proceedings of the Royal Society, B 279: 2409-2416.

11) Sousa VC, Coelho MM, Fernandes P, Beaumont M, Chikhi L (2012) Population divergence with or without admixture: selecting models using an ABC approach. Heredity, 108: 521-530.

10) Sousa VC, Grelaud A, Hey J (2011) On the nonidentifiability of migration times in isolation with migration models. Molecular Ecology, 20(19): 3956–3962.

9) Chikhi L, Sousa VC, Luisi P, Goossens B, Beaumont M (2010) The confounding effects of population structure, genetic diversity and the sampling scheme on the detection and quantification of population size changes. Genetics, 186: 983-995.

8) Sousa VC, Penha F, Pala I, Chikhi L, Coelho MM (2010) Conservation genetics of a critically endangered Iberian minnow: evidence of population decrease and contraction in the distribution area. Animal Conservation, 13: 162-171.

7) Bray T, Sousa VC, Parreira B, Bruford M, Chikhi L (2010) 2BAD: and application to estimate the parental contributions during two independent admixture events. Molecular Ecology Resources, 10: 538-541.

6) Henriques R, Sousa VC, Coelho MM (2010) Migration patterns counteract seasonal isolation of Squalius torgalensis, a critically endangered freshwater fish inhabiting a typical Circum-Mediterranean small drainage. Conservation Genetics, 11(5): 1859-1870.

5) Sousa VC, Fritz M, Beaumont M, Chikhi L (2009) Approximate Bayesian Computation (ABC) without summary statistics: the case of admixture. Genetics, 181: 1507-1519.

4) Craul M, Chikhi L, Sousa VC, Olivieri GL, Rabesandratana A, Zimmermann E, Radespiel U (2009) Influence of forest fragmentation on endangered large-bodied lemurs in northwestern Madagascar – Implications for conservation. Biological Conservation, 142(12): 2862-2871.

3) Parreira B, Trussart M, Sousa VC, Hudson R, Chikhi L (2009) SPAms: A user-friendly software to simulate population genetics data under complex demographic models. Molecular Ecology Resources, 9(3): 749-753.

2) Sousa VC, Penha F, Collares-Pereira MJ, Chikhi L, Coelho MM (2008) Genetic structure and signature of population decrease in the critically endangered freshwater cyprinid Chondrostoma lusitanicum. Conservation Genetics, 9: 791–805.

1) Olivieri GL, Sousa VC, Chikhi L, Radespiel U (2008) From genetic diversity and structure to conservation: Genetic signature of recent population declines in three mouse lemur species (Microcebus spp.). Biological Conservation, 141: 1257-1271.