Pina‐Martins, F., Baptista, J., Pappas, G., & Paulo, O. S. (2019). New insights into adaptation and population structure of cork oak using genotyping by sequencing. Global Change Biology, 25(1), 337–350. https://doi.org/10.1111/gcb.14497

Pina-Martins, F., Silva, D. N., Fino, J., & Paulo, O. S. (2017). Structure_threader: An improved method for automation and parallelization of programs structure, fastStructure and MavericK on multicore CPU systems. Molecular Ecology Resources, 17(6), e268–e274. https://doi.org/10.1111/1755-0998.12702

Pina-Martins, F., Caperta, A. D., Conceição, S. I. R., Nunes, V. L., Marques, I., & Paulo, O. S. (2023). A first look at sea-lavenders genomics – can genome wide SNP information tip the scales of controversy in the Limonium vulgare species complex? BMC Plant Biology, 23(1), 34. https://doi.org/10.1186/s12870-022-03974-2

Laurentino, T. G., Dittmer, D. E., Grundler, M. R., Pina-Martins, F., Haddock, J., Hibbitts, T. J., & Rosenblum, E. B. (2022). Repeated evolution of blanched coloration in a lizard across independent white-sand habitats. Ecology and Evolution, 12(12), e9555. https://doi.org/10.1002/ece3.9555

Pina-Martins, F., & Paulo, O. S. (2016). NCBI Mass Sequence Downloader–Large dataset downloading made easy. SoftwareX, 5, 80–83. https://doi.org/10.1016/j.softx.2016.04.007

Bradnam, K. R., Fass, J. N., Alexandrov, A., Baranay, P., Bechner, M., Birol, I., Boisvert, S., Chapman, J. A., Chapuis, G., Chikhi, R., Chitsaz, H., Chou, W.-C., Corbeil, J., Fabbro, C. D., Docking, T. R., Durbin, R., Earl, D., Emrich, S., Fedotov, P., … Korf, I. F. (2013). Assemblathon 2: Evaluating de novo methods of genome assembly in three vertebrate species. GigaScience, 2(1), 10. https://doi.org/10.1186/2047-217X-2-10

Pina-Martins, F., & Paulo, O. S. (2008). Concatenator: Sequence data matrices handling made easy. Molecular Ecology Resources, 8(6), 1254–1255. https://doi.org/10.1111/j.1755-0998.2008.02164.x