My Ten most relevant publications are so far:

1) Malaspinas, A.S.*, Westaway, M.C.*, Muller, C*, Sousa, V.C.*, Lao, O.*, Alves, I.*, Bergström, A.*, Athanasiadis, G., Cheng, J.Y., Crawford, J.E., Heupink, T.H., Macholdt, E., Peischl, S., Rasmussen, S., Schiffels, S., Subramanian, S., Wright, J.L., Albrechtsen, A., Barbieri, C., Dupanloup, I., Eriksson, A., Margaryan, A., Moltke, I., Pugach, I., Korneliussen, T.S., Levkivsky, I.P., Moreno-Mayar, J.V., Ni, S., Racimo, F., Sikora, M., Xue, Y., Aghakhanian, F.A., Brucato, N., Brunak, S., Campos, P.F., Clark, W., Ellingvåg, S., Fourmile, G., Gerbault, P., Injie, D., Koki, G., Leavesley, M., Logan, B., Lynch, A., Matisoo-Smith, E.A., McAllister, P.J., Mentzer, A.J., Metspalu, M., Migliano, A.B., Murgha, L., Phipps, M.E., Pomat, W., Reynolds, D., Ricaut, F-X., Siba, P., Thomas, M.G., Wales, T., Wall, C., Oppenheimer, S.J., Tyler-Smith, C., Durbin, R., Dortch, J., Manica, A., Schierup, M.H., Foley, R.A., Lahr, M.M., Bowern, C., Wall, J.D., Mailund, T., Stoneking, M., Nielsen, R., Sandhu, M.S.^, Excoffier, L.^, Lambert, D.M.^,  Willerslev, E.^ (2016) A genomic history of Aboriginal Australians. Nature, 538, 207-214 (*shared first authorship; ^shared corresponding author).

2) de Manuel, M.*, Kuhlwilm, M. *, Frandsen, P.*, Sousa, V.C., Desai, T., Prado-Martinez, J., Hernandez-Rodriguez, J., Dupanloup, I., Lao, O., Hallas,t P., Schmidt, J., Heredia-Genestar, J.M., Benazzo, A., Barbujani, G., Peter, B.M., Kuderna, L.F., Casals, F., Angedakin, S., Langergraber, K., Arandjelovic, M., Kühl, H., Vigilant, L., Boesch, C., Novembre, J., Gut, M., Gut, I., Navarro, A., Andres, A., Siegismund, H.R., Scally, A., Excoffier, L., Tyler-Smith, C., Castellano, S., Xue, Y., Hvilsom, C., Marques-Bonet, T. (2016) Chimpanzee genomic diversity reveals ancient admixture with bonobos. Science 354: 477-481.

3) Laurent, S., Pfeifer, S.P., Settles, M.L., Hunter, S.S., Hardwick, K.M., Ormond, L., Sousa, V.C., Jensen, J.D., Rosenblum, E.B. (2016) The population genomics of rapid adaptation: disentangling signatures of selection and demography in white sands lizards. Molecular Ecology, 25(1), 306-323.

4) Excoffier, L., Dupanloup, I., Huerta-Sánchez, E., Sousa, V.C., Foll, M. (2013) Robust demographic inference from genomic and SNP data. PLOS Genetics, 9(10), e1003905.

5) Sousa, V.C., Hey, J. (2013) Understanding the origin of species with genome-scale data: modelling gene flow. Nature Reviews Genetics, 14(6), 404-414.

6) Sousa, V.C., Carneiro, M., Ferrand, N., Hey, J. (2013) Identifying loci under selection against gene flow in isolation-with-migration models. Genetics, 194(1), 211-233.

7) Sousa, V.C., Coelho, M.M., Fernandes, P., Beaumont, M., Chikhi, L. (2012) Population divergence with or without admixture: selecting models using an ABC approach. Heredity, 108, 521-530.

8) Sousa, V.C., Grelaud, A., Hey, J. (2011) On the nonidentifiability of migration times in isolation with migration models. Molecular Ecology, 20(19), 3956–3962.

9) Chikhi, L., Sousa, V.C., Luisi, P., Goossens, B., Beaumont, M. (2010) The confounding effects of population structure, genetic diversity and the sampling scheme on the detection and quantification of population size changes. Genetics, 186, 983-995.

10) Sousa, V.C., Fritz, M., Beaumont, M., Chikhi, L. (2009) Approximate Bayesian Computation (ABC) without summary statistics: the case of admixture. Genetics, 181, 1507-1519.