My Ten most relevant publications are so far:
1) Malaspinas, A.S.*, Westaway, M.C.*, Muller, C*, Sousa, V.C.*, Lao, O.*, Alves, I.*, Bergström, A.*, Athanasiadis, G., Cheng, J.Y., Crawford, J.E., Heupink, T.H., Macholdt, E., Peischl, S., Rasmussen, S., Schiffels, S., Subramanian, S., Wright, J.L., Albrechtsen, A., Barbieri, C., Dupanloup, I., Eriksson, A., Margaryan, A., Moltke, I., Pugach, I., Korneliussen, T.S., Levkivsky, I.P., Moreno-Mayar, J.V., Ni, S., Racimo, F., Sikora, M., Xue, Y., Aghakhanian, F.A., Brucato, N., Brunak, S., Campos, P.F., Clark, W., Ellingvåg, S., Fourmile, G., Gerbault, P., Injie, D., Koki, G., Leavesley, M., Logan, B., Lynch, A., Matisoo-Smith, E.A., McAllister, P.J., Mentzer, A.J., Metspalu, M., Migliano, A.B., Murgha, L., Phipps, M.E., Pomat, W., Reynolds, D., Ricaut, F-X., Siba, P., Thomas, M.G., Wales, T., Wall, C., Oppenheimer, S.J., Tyler-Smith, C., Durbin, R., Dortch, J., Manica, A., Schierup, M.H., Foley, R.A., Lahr, M.M., Bowern, C., Wall, J.D., Mailund, T., Stoneking, M., Nielsen, R., Sandhu, M.S.^, Excoffier, L.^, Lambert, D.M.^, Willerslev, E.^ (2016) A genomic history of Aboriginal Australians. Nature, 538, 207-214 (*shared first authorship; ^shared corresponding author). |
2) de Manuel, M.*, Kuhlwilm, M. *, Frandsen, P.*, Sousa, V.C., Desai, T., Prado-Martinez, J., Hernandez-Rodriguez, J., Dupanloup, I., Lao, O., Hallas,t P., Schmidt, J., Heredia-Genestar, J.M., Benazzo, A., Barbujani, G., Peter, B.M., Kuderna, L.F., Casals, F., Angedakin, S., Langergraber, K., Arandjelovic, M., Kühl, H., Vigilant, L., Boesch, C., Novembre, J., Gut, M., Gut, I., Navarro, A., Andres, A., Siegismund, H.R., Scally, A., Excoffier, L., Tyler-Smith, C., Castellano, S., Xue, Y., Hvilsom, C., Marques-Bonet, T. (2016) Chimpanzee genomic diversity reveals ancient admixture with bonobos. Science 354: 477-481. |
3) Laurent, S., Pfeifer, S.P., Settles, M.L., Hunter, S.S., Hardwick, K.M., Ormond, L., Sousa, V.C., Jensen, J.D., Rosenblum, E.B. (2016) The population genomics of rapid adaptation: disentangling signatures of selection and demography in white sands lizards. Molecular Ecology, 25(1), 306-323. |
4) Excoffier, L., Dupanloup, I., Huerta-Sánchez, E., Sousa, V.C., Foll, M. (2013) Robust demographic inference from genomic and SNP data. PLOS Genetics, 9(10), e1003905. |
5) Sousa, V.C., Hey, J. (2013) Understanding the origin of species with genome-scale data: modelling gene flow. Nature Reviews Genetics, 14(6), 404-414. |
6) Sousa, V.C., Carneiro, M., Ferrand, N., Hey, J. (2013) Identifying loci under selection against gene flow in isolation-with-migration models. Genetics, 194(1), 211-233. |
7) Sousa, V.C., Coelho, M.M., Fernandes, P., Beaumont, M., Chikhi, L. (2012) Population divergence with or without admixture: selecting models using an ABC approach. Heredity, 108, 521-530. |
8) Sousa, V.C., Grelaud, A., Hey, J. (2011) On the nonidentifiability of migration times in isolation with migration models. Molecular Ecology, 20(19), 3956–3962. |
9) Chikhi, L., Sousa, V.C., Luisi, P., Goossens, B., Beaumont, M. (2010) The confounding effects of population structure, genetic diversity and the sampling scheme on the detection and quantification of population size changes. Genetics, 186, 983-995. |
10) Sousa, V.C., Fritz, M., Beaumont, M., Chikhi, L. (2009) Approximate Bayesian Computation (ABC) without summary statistics: the case of admixture. Genetics, 181, 1507-1519. |