INTERNATIONAL PEER REVIEWED PAPERS (IN JOURNALS WITH IMPACT FACTOR)

46) S. G. Seabra, I. Satar, and O. S. Paulo, “Microsatellite loci isolated from Chamaeleo chamaeleon,” J. Genet., vol. 93, no. 3, pp. 144–147, 2014.

45) I. S. Modesto, C. Miguel, F. Pina-Martins, M. Glushkova, M. Veloso, O. S. Paulo, and D. Batista, “Identifying signatures of natural selection in cork oak (Quercus suber L.) genes through SNP analysis,” Tree Genet. Genomes, Aug. 2014.

44) M. Sebastiana, B. Vieira, T. Lino-Neto, F. Monteiro, A. Figueiredo, L. Sousa, M. S. Pais, R. Tavares, and O. S. Paulo, “Oak Root Response to Ectomycorrhizal Symbiosis Establishment: RNA-Seq Derived Transcript Identification and Expression Profiling.,” PLoS One, vol. 9, no. 5, p. e98376, Jan. 2014.

43) A. S. B. Rodrigues, S. E. Silva, E. Marabuto, D. N. Silva, M. R. Wilson, V. Thompson, S. Yurtsever, A. Halkka, P. a V Borges, J. a Quartau, O. S. Paulo, and S. G. Seabra, “New Mitochondrial and Nuclear Evidences Support Recent Demographic Expansion and an Atypical Phylogeographic Pattern in the Spittlebug Philaenus spumarius (Hemiptera, Aphrophoridae).,” PLoS One, vol. 9, no. 6, p. e98375, Jan. 2014.

42) J. B. Pereira-Leal, I. a Abreu, C. S. Alabaça, M. H. Almeida, P. Almeida, T. Almeida, M. I. Amorim, S. Araújo, H. Azevedo, A. Badia, D. Batista, A. Bohn, T. Capote, I. Carrasquinho, I. Chaves, A. C. Coelho, M. M. Costa, R. Costa, A. Cravador, C. Egas, C. Faro, A. M. Fortes, A. S. Fortunato, M. J. Gaspar, S. Gonçalves, J. Graça, M. Horta, V. Inácio, J. M. Leitão, T. Lino-Neto, L. Marum, J. Matos, D. Mendonça, A. Miguel, C. M. Miguel, L. Morais-Cecílio, I. Neves, F. Nóbrega, M. M. Oliveira, R. Oliveira, M. S. Pais, J. a Paiva, O. S. Paulo, M. Pinheiro, J. a Raimundo, J. C. Ramalho, A. I. Ribeiro, T. Ribeiro, M. Rocheta,  a I. Rodrigues, J. C. Rodrigues, N. J. Saibo, T. E. Santo,  a M. Santos, P. Sá-Pereira, M. Sebastiana, F. Simões, R. S. Sobral, R. Tavares, R. Teixeira, C. Varela, M. M. Veloso, and C. P. Ricardo, “A comprehensive assessment of the transcriptome of cork oak (Quercus suber) through EST sequencing.,” BMC Genomics, vol. 15, no. 1, p. 371, May 2014.

41) V. L. Nunes, R. Mendes, E. Marabuto, B. M. Novais, T. Hertach, J. A. Quartau, S. G. Seabra, O. S. Paulo, and P. C. Simões, Conflicting patterns of DNA barcoding and taxonomy in the cicada genus Tettigettalna from southern Europe (Hemiptera: Cicadidae). Molecular Ecology Resources, 2014.

40) C. G. Dourado, M. A. Duarte, A. R. Grosso, C. Bastos-Silveira, P. Marrero, P. Oliveira, O. S. Paulo, and D. Dias, Phylogenetic origin of the endemic pigeons from Madeira (Columba trocaz) and Azores Islands (Columba palumbus azorica), vol. 155, no. 1. Journal of Ornithology, 2014.

39) P. Talhinhas, H. G. Azinheira, B. Vieira, A. Loureiro, S. Tavares, D. Batista, E. Morin, A.-S. Petitot, O. S. Paulo, J. Poulain, C. Da Silva, S. Duplessis, M. D. C. Silva, and D. Fernandez, “Overview of the functional virulent genome of the coffee leaf rust pathogen Hemileia vastatrix with an emphasis on early stages of infection.,” Front. Plant Sci., vol. 5, no. March, p. 88, Jan. 2014.

38) P. Simões, V. Nunes, R. Mendes, S. Seabra, O. Paulo, and J. Quartau, “Tettigettalna josei (Boulard, 1982) (Hemiptera: Cicadoidea): first record in Spain, with notes on the distribution, genetic variation and behaviour of the species,” Biodivers. Data J., vol. 2, p. e1045, May 2014.

37) S. G. Seabra, P. G. Brás, V. Zina, E. Borges da Silva, M. T. Rebelo, E. Figueiredo, Z. Mendel, O. S. Paulo, and J. C. Franco, Molecular Evidence of Polyandry in the Citrus Mealybug, Planococcus citri (Hemiptera: Pseudococcidae)., vol. 8, no. 7. PloS One, 2013.

36) K. R. Bradnam, J. N. Fass, A. Alexandrov, P. Baranay, M. Bechner, I. Birol, S. Boisvert, J. a Chapman, G. Chapuis, R. Chikhi, H. Chitsaz, W.-C. Chou, J. Corbeil, C. Del Fabbro, T. R. Docking, R. Durbin, D. Earl, S. Emrich, P. Fedotov, N. a Fonseca, G. Ganapathy, R. a Gibbs, S. Gnerre, E. Godzaridis, S. Goldstein, M. Haimel, G. Hall, D. Haussler, J. B. Hiatt, I. Y. Ho, J. Howard, M. Hunt, S. D. Jackman, D. B. Jaffe, E. Jarvis, H. Jiang, S. Kazakov, P. J. Kersey, J. O. Kitzman, J. R. Knight, S. Koren, T.-W. Lam, D. Lavenier, F. Laviolette, Y. Li, Z. Li, B. Liu, Y. Liu, R. Luo, I. Maccallum, M. D. Macmanes, N. Maillet, S. Melnikov, D. Naquin, Z. Ning, T. D. Otto, B. Paten, O. S. Paulo, A. M. Phillippy, F. Pina-Martins, M. Place, D. Przybylski, X. Qin, C. Qu, F. J. Ribeiro, S. Richards, D. S. Rokhsar, J. G. Ruby, S. Scalabrin, M. C. Schatz, D. C. Schwartz, A. Sergushichev, T. Sharpe, T. I. Shaw, J. Shendure, Y. Shi, J. T. Simpson, H. Song, F. Tsarev, F. Vezzi, R. Vicedomini, B. M. Vieira, J. Wang, K. C. Worley, S. Yin, S.-M. Yiu, J. Yuan, G. Zhang, H. Zhang, S. Zhou, and I. F. Korf, “Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species.,” Gigascience, vol. 2, no. 1, p. 10, Jul. 2013.

35) S. E. Silva, I. C. Silva, C. Madeira, R. Sallema, O. S. Paulo, and J. Paula, “Genetic and morphological variation in two littorinid gastropods: evidence for recent population expansions along the East African coast,” Biol. J. Linn. Soc., vol. 108, no. 3, pp. 494–508, Mar. 2013.

34) A. Miraldo, C. Faria, G. M. Hewitt, O. S. Paulo, and B. C. Emerson, “Genetic analysis of a contact zone between two lineages of the ocellated lizard ( Lacerta lepida Daudin 1802) in south-eastern Iberia reveal a steep and narrow hybrid zone,” J. Zool. Syst. Evol. Res., vol. 51, no. 1, pp. 45–54, Feb. 2013.

33) A. Vieira, P. Talhinhas, A. Loureiro, J. Thürich, S. Duplessis, D. Fernandez, M. do Céu Silva, O. S. Paulo, and H. G. Azinheira, “Expression profiling of genes involved in the biotrophic colonisation of Coffea arabica leaves by Hemileia vastatrix,” Eur. J. Plant Pathol., vol. 133, no. 1, pp. 261–277, Sep. 2012.

32) D. N. Silva, P. Talhinhas, V. Varzea, L. Cai, O. S. Paulo, and D. Batista, “Application of the Apn2/MAT locus to improve the systematics of the Colletotrichum gloeosporioides complex: an example from coffee (Coffea spp.) hosts,” Mycologia, vol. 104, no. 2, pp. 396–409, 2012.

31) R. F. Martins, V. Zina, E. B. Da Silva, M. T. Rebelo, E. Figueiredo, Z. Mendel, O. S. Paulo, J. C. Franco, and S. G. Seabra, “Isolation and characterization of fifteen polymorphic microsatellite loci for the citrus mealybug, Planococcus citri (Hemiptera: Pseudococcidae), and cross-amplification in two other mealybug species.,” J. Genet., vol. 91, no. 2, pp. e75–8, Aug. 2012.

30) S. Godinho, O. S. Paulo, L. Morais-Cecilio, and M. Rocheta, “A new gypsy-like retroelement family in *Vitis vinifera*,” Vitis, vol. 51, no. 2, pp. 65–72, 2012.

29) D. N. Silva, P. Talhinhas, L. Cai, L. Manuel, E. K. Gichuru, A. Loureiro, V. Várzea, O. S. Paulo, and D. Batista, “Host-jump drives rapid and recent ecological speciation of the emergent fungal pathogen Colletotrichum kahawae.,” Mol. Ecol., vol. 21, no. 11, pp. 2655–70, Jun. 2012.

28) V. L. Nunes, M. A. Beaumont, R. K. Butlin, and O. S. Paulo, “Challenges and pitfalls in the characterization of anonymous outlier AFLP markers in non-model species: lessons from an ocellated lizard genome scan.,” Heredity (Edinb)., vol. 109, no. 6, pp. 340–8, Dec. 2012.

27) A. Miraldo, G. M. Hewitt, P. H. Dear, O. S. Paulo, and B. C. Emerson, “Numts help to reconstruct the demographic history of the ocellated lizard (Lacerta lepida) in a secondary contact zone.,” Mol. Ecol., vol. 21, no. 4, pp. 1005–18, Feb. 2012.

26) A. Vieira, P. Talhinhas, A. Loureiro, S. Duplessis, D. Fernandez, M. D. C. Silva, O. S. Paulo, and H. G. Azinheira, “Validation of RT-qPCR reference genes for in planta expression studies in Hemileia vastatrix, the causal agent of coffee leaf rust.,” Fungal Biol., vol. 115, no. 9, pp. 891–901, Sep. 2011.

25) V. L. Nunes, A. Miraldo, M. A. Beaumont, R. K. Butlin, and O. S. Paulo, “Association of Mc1r variants with ecologically relevant phenotypes in the European ocellated lizard, Lacerta lepida,” J. Evol. Biol., vol. 24, pp. 2289–2298, 2011.

24) M. M. Romeiras, O. S. Paulo, M. C. Duarte, F. Pina-Martins, M. H. Cotrim, M. a. Carine, and M. S. Pais, “Origin and diversification of the genus echium (Boraginaceae) in the Cape Verde archipelago,” Taxon, vol. 60, no. 5, pp. 1375–1385, 2011.

23) V. L. Nunes, M. a Beaumont, R. K. Butlin, and O. S. Paulo, “Multiple approaches to detect outliers in a genome scan for selection in ocellated lizards (Lacerta lepida) along an environmental gradient.,” Mol. Ecol., vol. 20, no. 2, pp. 193–205, Jan. 2011.

22) A. Miraldo, G. M. Hewitt, O. S. Paulo, and B. C. Emerson, “Phylogeography and demographic history of Lacerta lepida in the Iberian Peninsula: multiple refugia, range expansions and secondary contact zones.,” BMC Evol. Biol., vol. 11, no. 1, p. 170, Jan. 2011.

21) C. M. Pereira, J. Rosado, S. G. Seabra, F. Pina-Martins, O. S. Paulo, and P. J. Fonseca, “Conus pennaceus : a phylogenetic analysis of the Mozambican molluscan complex,” African J. Mar. Sci., vol. 32, no. 3, pp. 591–599, Dec. 2010.

20) S. G. Seabra, F. Pina-Martins, E. Marabuto, S. Yurtsever, O. Halkka, J. A. Quartau, and O. S. Paulo, “Molecular phylogeny and DNA barcoding in the meadow-spittlebug Philaenus spumarius (Hemiptera, Cercopidae) and its related species,” Mol. Phylogenet. Evol., vol. 56, no. 1, pp. 462–467, 2010.

19) M. M. Fonseca, J. C. Brito, O. S. Paulo, M. A. Carretero, and D. J. Harris, “Systematic and phylogeographical assessment of the Acanthodactylus erythrurus group (Reptilia: Lacertidae) based on phylogenetic analyses of mitochondrial and nuclear DNA,” Mol. Phylogenet. Evol., vol. 51, no. 2, pp. 131–142, 2009.

18) P. J. Fonseca, E. A. Serrao, F. Pina-Martins, P. Silva, S. Mira, J. A. Quartau, O. S. Paulo, and L. Cancela, “The evolution of cicada songs contrasted with the relationships inferred from mitochondrial DNA (Insecta, Hemiptera).,” Bioacoustics-the Int. J. Anim. Sound Its Rec., vol. 18, pp. 17–34, 2008.

17) D. Batista, T. Valdiviesso, L. Santos, R. Costa, O. S. Paulo, and J. Gomes-Laranjo, “Genotyping castanea sativa × C. crenata and C. sativa × C. mollissima F1 hybrids using nuclear SSRs,” in Acta Horticulturae, 2008, vol. 784, pp. 107–112.

16) F. Pina-Martins and O. S. Paulo, “Concatenator: Sequence Data Matrices Handling Made Easy.,” Mol. Ecol. Resour., vol. 8, no. 6, pp. 1254–5, Nov. 2008.

15) O. S. Paulo, J. Pinheiro, A. Miraldo, M. W. Bruford, W. C. Jordan, and R. a. Nichols, “The role of vicariance vs. dispersal in shaping genetic patterns in ocellated lizard species in the western Mediterranean,” Mol. Ecol., vol. 17, no. 6, pp. 1535–1551, Mar. 2008.

14) P. L. Moreira, V. L. Nunes, J. Martín, O. S. Paulo and J. Mart’in, “Copulatory plugs do not assure high first male fertilisation success: sperm displacement in a lizard.,” Behav. Ecol. Sociobiol., vol. 62, no. 2, pp. 281–288, 2007.

13) A. MIRALDO, I. et al (including O.S. Paulo)  “Distribution and Conservation of the Common Chamaeleo Chamaeleon, in Algarve, Southern Portugal,” Isr. J. …, vol. 51, no. September, pp. 157–164, 2005.

12) C. Luís, R. Rebelo, J. C. Brito, R. Godinho, O. S. Paulo, and E. G. Crespo, “Age structure in Lacerta schreiberi from Portugal,” Amphibia-Reptilia, vol. 25, pp. 336–343, 2004.

11) R. Godinho, O. S. Paulo, N. Ferrand, C. Luis, H. D. Rosa, and E. G. Crespo, “Major patterns of population differentiation in the Iberian Schreiber’s green lizard (Lacerta schreiberi) inferred from protein polymorphism,” Herpetol. J., vol. 13, no. 1, pp. 35–42, 2003.

10) A. P. Almeida, H. D. Rosa, O. S. Paulo, and E. G. Crespo, “Genetic differentiation of populations of Iberian rock-lizards Iberolacerta (Iberolacerta) sensu Arribas (1999),” J. Zool. Syst. Evol. Res., vol. 40, no. 2, pp. 57–64, 2002.

9) O. S. Paulo, I. Pinto, M. W. Bruford, W. C. Jordan, and R. A. Nichols, “The double origin of Iberian peninsular chameleons,” Biol. J. Linn. Soc., vol. 75, no. 1, pp. 1–7, 2002.

8) O. S. Paulo, W. C. Jordan, M. W. Bruford, and R. a Nichols, “Using nested clade analysis to assess the history of colonization and the persistence of populations of an Iberian Lizard.,” Mol. Ecol., vol. 11, no. 4, pp. 809–19, Apr. 2002.

7) O. S. Paulo, C. Dias, M. W. Bruford, W. C. Jordan, and R. A. Nichols, “The persistence of Pliocene populations through the Pleistocene climatic cycles: evidence from the phylogeography of an Iberian lizard,” Proc. R. Soc. London, Ser. B Biol. Sci., vol. 268, no. 1476, pp. 1625–1630, 2001.

6) A. M. Viegas-Crespo, M. L. Pavão, O. Paulo, V. Santos, M. C. Santos, and J. Nève, “Trace element status (Se, Cu, Zn) and serum lipid profile in Portuguese subjects of San Miguel Island from Azores’archipelago.,” J. Trace Elem. Med. Biol., vol. 14, no. 1, pp. 1–5, Apr. 2000.

5) J. C. Brito, E. G. Crespo, and O. S. Paulo, “Modelling wildlife distributions: logistic multiple regression vs overlap analysis,” Ecography (Cop.)., pp. 251–260, 1999.

4) J. C. Brito, R. Godinho, C. Luis, O. S. Paulo, and E. G. Crespo, “Management strategies for conservation of the lizard Lacerta schreiberi in Portugal,” Biol. Conserv., vol. 89, no. 3, pp. 311–319, 1999.

3) J. C. Brito, O. S. Paulo, and E. G. Crespo, “Distribution and habitats of Schreiber’s green lizard (Lacerta schreiberi) in Portugal,” Herpetol. J., vol. 8, no. 4, pp. 187–194, 1998.

2) J. Brito, O. S. Paulo, H. D. Rosa, E. G. Crespo, F. Abreu, and E. Brito, “Distribution os Schreiberi’s green lizard (Lacerta schreiberi) in Portugal: a predictive model,” Herpetol. J., vol. 6, no. July, pp. 43–47, 1996.

1) A. M. Viegas-Crespo, J. Nève, M. L. Monteiro, M. F. Amorim, O. S. Paulo, and M. J. Halpern, “Selenium and lipid parameters in plasma of Portuguese subjects.,” J. Trace Elem. Electrolytes Health Dis., vol. 8, no. 2, pp. 119–22, 1994.

BOOKS (Author)

1) L. VICENTE and O. PAULO, “Behavioral and morphological adaptations of the lizard Lacerta lepida to particular environmental constraints,” in NATO ADVANCED SCIENCE INSTITUTES SERIES, SERIES D, BEHAVIORAL AND SOCIAL SCIENCES, vol. 48, R. J. Blanchard, P. F. Brain, D. C. Blanchard, and S. Parmigiani, Eds. Dordrech: Kluwer Academic Publishers, 1989, pp. 640–643.

PROCEEDINGS OF SYMPOSIA

1) D. Batista, V. L. Nunes, J. Gomes-Laranjo, O. S. Paulo, and R. Costa, “Segregation of SSR and AFLP loci in chestnut F1 hybrids (Castanea sativa x C. crenata/C. mollissima),” 4th International Chestnut Symposium, Acta Horticulturae, ISHS , vol. 844. Beijing, China, pp. 249–255, 2009.