18) Munzi, S., Cruz C., Branquinho, C., Pinho, P., Leith, I.D. & Sheppard, L.J. 2014. Can ammonia tolerance amongst lichen functional groups be explained by physiological responses? Environmental Pollution, 187, 206-209. (IF=4,143)

17)  Pinho, P., Llop, E., Ribeiro, M.C., Cruz, C., Soares, A., Pereira, M.J. & Branquinho, C. 2014. Tools for determining critical levels of atmospheric ammonia under the influence of multiple disturbances. Environmental Pollution, 188, 88-93. (IF=4,143)

16) Munzi, S., Correia, O., Silva, P., Lopes, N., Freitas, C., Branquinho, C. & Pinho, P. 2014. Lichens as ecological indicators in urban areas: beyond the effects of pollutants. Journal of Applied Ecology, 51, 1750-1757. (IF=4,564)

15) Ribeiro, M.C., Pinho, P., Llop, E., Branquinho, C., Soares, A. & Pereira, M.J. 2014. Associations between outdoor air quality and birth weight: a geostatistical sequential simulation approach in Coastal Alentejo, Portugal. Stochastic Environmental Research and Risk Assessment, 28(3), 527-540. (IF=2,086)

14) Príncipe, A.S., Nunes, A., Pinho, P., Rosário, L., Correia, O. & Branquinho, C. 2014. Modeling the long-term natural regeneration potential of woodlands in semi-arid regions to guide restoration efforts. European Journal of Forest Research, 133(4), 757-767. (IF=2,095)

13) Ribeiro, M.C., Pinho, P., Llop, E., Branquinho, C., Sousa, A.J. & Pereira, M.J. 2013. Multivariate geostatistical methods for analysis of biodiversity and environmental factors at multiple spatial scales. Ecological Indicators, 29, 339-347. (IF=2.890)

12) Pinho, P., Theobald, M.R., Dias, T., Tang, Y.S., Cruz, C., Martins-Loução, M.A., Máguas, C., Sutton, M. & Branquinho, C. 2012. Critical loads of nitrogen deposition and critical levels of atmospheric ammonia for semi-natural Mediterranean evergreen woodlands. Biogeosciences, 9(3), 1205-1215. (IF=3.754)

11) Pinho, P., Bergamini, A., Carvalho, P., Branquinho, C., Stofer, S., Scheidegger, C. & Máguas, C. 2012. Lichen functional groups as ecological indicators of the effects of low-intensity land-use in Mediterranean ecosystems. Ecological Indicators, 15(1), 36-42. (IF=2.890)

10) Llop, E., Pinho, P., Matos, P., Pereira, M.J. & Branquinho, C. 2012. The use of lichen functional groups as indicators of air quality in a Mediterranean urban environment. Ecological Indicators, 13(1), 215-221. (IF=2.890)

9) Pinho, P., Dias, T., Cruz, C., Tang, Y.S., Sutton, M., Martins-Loução, M.A., Máguas, C. & Branquinho, C. 2011. Using lichen functional-diversity to assess the effects of atmospheric ammonia in Mediterranean woodlands. Journal of Applied Ecology, 48(5), 1107–1116. (IF=5.045)

8) Máguas, C., Rascher, K.G., Martins-Loução, A., Carvalho, P., Pinho, P., Ramos, M., Correia, O. & Werner, C. 2011. Responses of woody species to spatial and temporal ground water changes in coastal sand dune systems. Biogeosciences, 8, 3823-3832. (IF=3.859)

7) Branquinho, C., Gaio-Oliveira, G., Augusto, S., Pinho, P., Máguas, C. & Correia, O. 2008. Biomonitoring spatial and temporal impact of atmospheric dust from a cement industry. Environmental Pollution, 151(2), 292-299. (IF=3.135)

6) Pinho, P., Augusto, S., Martins-Loução, M.A., Pereira, M.J., Soares, A., Máguas, C. & Branquinho, C. 2008. Causes of change in nitrophytic and oligotrophic lichen species in a Mediterranean climate: Impact of land cover and atmospheric pollutants. Environmental Pollution, 154(3), 380-389. (IF=3.135)

5) Pinho, P., Augusto, S., Máguas, C., Pereira, M.J., Soares, A. & Branquinho, C. 2008. Impact of neighborhood land-cover in epiphytic lichen diversity: Analysis of multiple factors working at different spatial scales. Environmental Pollution, 152(2), 414-422. (IF=3.135)

4) Stofer, S., Bergamini, A., Aragon, G., Carvalho, P., Coppins, B.J., Davey, S., Dietrich, M., Farkas, E., Karkkainen, K., Keller, C., Lokos, L., Lommi, S., Maguas, C., Mitchell, R., Pinho, P., Rico, V.J., Truscott, A.M., Wolseley, P.A., Watt, A. & Scheidegger, C. 2006. Species richness of lichen functional groups in relation to land use intensity. Lichenologist, 38, 331-353. IF2006= 0.880

3) Bergamini, A., Scheidegger, C., Stofer, S., Carvalho, P., Davey, S., Dietrich, M., Dubs, F., Farkas, E., Groner, U., Kärkkäinen, K., Keller, C., Lökös, L., Lommi, S., Máguas, C., Mitchell, R., Pinho, P., Rico, V.J., Aragón, R.G, Truscott, A.M., Wolseley, P.A .& Watt, A. 2005. Performance of macrolichens and lichen genera as indicators of lichen species richness and composition. Conservation Biology, 19, 1051-1062. IF2005= 4.110

2) Pinho, P., Augusto, S., Branquinho, C., Bio, A., Pereira, M.J., Soares, A., Catarino, F. 2004. Mapping Lichen Diversity as a first step in air quality assessment. Journal of Atmospheric Chemistry, 49, 377-389. IF2004= 2.046

1) Augusto, S., Pinho, P., Branquinho, C., Bio, A, Pereira, M.J., Soares, A., Catarino, F. 2004. Atmospheric dioxins and furans deposition in relation to land-use and other pollutants: a survey with lichens. Journal of Atmospheric Chemistry, 49, 53-65. IF2004= 2.046

BOOKS (Author)

1)  Branquinho, C., Nunes A., Santos-Reis M., Correia, O., Matos, P., Pinho P., Munzi S. & Tápia S. 2013. Guia de Campo da Região de Neves Corvo. Uma Mina de Biodiversidade. Coordenação geral de Gama H. & Branquinho C. Lundin mining, Somincor, FCUL. pp. 196. ISBN 978-972-97081-2-1.

BOOKS (Chapters)

7) Pinho, P., Martins-Loução, M.A., Máguas, C. & Branquinho, C. 2014. Calibrating Total Nitrogen Concentration in Lichens with Emissions of Reduced Nitrogen at the Regional Scale. In Sutton MA, Mason KE, Sheppard LJ, Sverdrup H, Haeuber R, Hicks WK, (eds.) Nitrogen Deposition, Critical Loads and Biodiversity. Springer. pp.217-227.

6)  Branquinho, C., Gonzalez, C., Clemente, A., Pinho, P. & Correia, O. 2014. The Impact of Rural Land-Use on the Ecological Integrity of the Intermittent Streams of the Mediterranean 2000 Natura Network. In Sutton MA, Mason KE, Sheppard LJ, Sverdrup H, Haeuber R, Hicks WK, (eds) Nitrogen Deposition, Critical Loads and Biodiversity. Springer. pp.229-241.

5) Aas, W., Carou, S., Alebic-Juretic, A., Aneja, V.P., Balasubramanian, R., Berge, H., Cape, J.N., Delon, C., Denmead, O.T., Dennis, R.L., Dentener, F., Dore, A.J., Du, E., Forti, M.C., Galy-Lacaux, C., Geupel, M., Haeuber, R., Lacoban, C., Komarov, A.S., Kubin, E., Kulshrestha, U.C., Lamb, B., Liu, X., Patra, D.D., Pienaar, J.J., Pinho, P., Rao, P.S.P., Shen, J., Sutton, M.A., Theobald, M.R., Vadrevu, K.P. & Vet, R. 2014. Progress in Nitrogen Deposition Monitoring and Modelling. In Sutton MA, Mason KE, Sheppard LJ, Sverdrup H, Haeuber R, Hicks WK (eds) Nitrogen Deposition, Critical Loads and Biodiversity. pp.455-463.

4) Martins-Loução, M.A., Cruz, C., Pinho, P., Dias, T. & Branquinho, C. 2011. Nitrogen deposition and Natura 2000 in Portugal. In W.K. Hicks, C.P. Whitefield, B.J. Bealey, & M.A. Sutton (eds) Nitrogen deposition and Natura 2000: Science and Practices Determining Environmental Impacts. COST Office (COST729). pp.260-268.

3) Pinho, P., Máguas, C., Cruz, C., Martins-Loução, M.A. & Branquinho, C. 2011. Selecting critical areas for monitoring the impact of ammonia on biodiversity within the Mediterranean Natura 2000 sites. In W.K. Hicks, C.P. Whitefield, B.J. Bealey, & M.A. Sutton (eds) Nitrogen deposition and Natura 2000: Science and Practices Determining Environmental Impacts. COST Office (COST729). pp.165-171.

2) Strengborn, J., Andersen, H.V., Aazem, K., Adema, E.B, Alard, D., Bobbink, R., Bringmark, L., Buchwald, E., Cape, N., Cruz, C., Feest, A., Forsius, M., Harmers, H., Nardin, A., Pinho, P., Rothier, S.L.F., Sheppard, L., Staelens, J., Tsiouris, S. & Wuyts, K. 2011. New Science and Effects of nitrogen deposition and concentrations on Natura 2000. In W.K. Hicks, C.P. Whitefield, W.J. Bealey & M.A. Sutton (eds) Nitrogen deposition and Natura 2000. Science and practice in determining environmental impacts. European Science Foundation.  pp.115-200.

1) Pinho, P., Branquinho, C., Cruz, C., Tang, S., Dias, T., Rosa, A.P., Máguas, C., Martins-Loução, M.A., Sutton, M. 2009. Assessment of critical levels of atmospherically ammonia for lichen diversity in cork-oak woodland, Portugal. Chapter 10: Critical Loads. In Sutton M., Reis S. and Baker S. (eds) Atmospheric Ammonia - Detecting emission changes and environmental impacts - Results of an Expert Workshop under the Convention on Long-range Transboundary Air Pollution. Springer. pp.109-119.