Nunes, B., Barata, A.R., Oliveira, R., Guedes, H., Almeida, C., Jorge da Silva, G., Nogueira, T., Saavedra, M.J. & Almeida, G. (2024) Occurrence and diversity of Listeria monocytogenes in Portuguese dairy farms. The Microbe, 3, 100063. DOI:10.1016/j.microb.2024.100063.

Azevedo, I., Barbosa, J., Albano, H., Nogueira, T. & Teixeira, P (2024) Lactic Acid Bacteria isolated from traditional and innovative alheiras as potential biocontrol agents.

Mavrikaki, E., Realdon, G., Aivelo, T., ... Nogueira, T., et al. (2024) Evolution in European and Israeli school curricula – a comparative analysis.

Rebelo, J.S., Domingues, C.P. F., Nogueira, T. & Dionisio, F. (2023) Plasmid-bearing cells can use their plasmids as efficient weapons even if transconjugants are poor donors.

Ribeiro, M., Maciel, C., Cruz, P., Darmancier, H., Nogueira, T., Costa, M., Laranjeira, J., et al. (2023) Exploiting potential probiotic lactic acid bacteria isolated from Chlorella vulgaris photobioreactors as promising vitamin B12 producers. 

Domingues, C.P.F., Rebelo, J.S., Dionisio, F. & Nogueira, T. (2023) Multi-drug resistance in bacterial genomes - a comprehensive bioinformatic analysis. 

de Lima, J., Adnađević, T., Barstad, J., Georgiou, M., Holm, S., Kenig, B., Martinelli, L., Nogueira, T., Savkovic, U., Tsopoglou-Gkina, D. & Milosevic, T. (2023) Developing non-formal learning activities focused on increasing evolutionary knowledge and scientific literacy. 63 pp. DOI:10.5281/ZENODO.7711038.

Dionisio, F., Domingues, C.P.F., Rebelo, J.S., Monteiro, F. & Nogueira, T. (2023) The impact of non-pathogenic bacteria on the spread of virulence and resistance genes.

Nogueira, T. (2022) Genomic analysis of antibiotics resistance in pathogens. Genomic analysis of antibiotics resistance in pathogens (ed. by T. Nogueira), 1-3. MDPI. ISBN:978-3-0365-6524-8.

Nogueira, T. (Ed.) (2022) Genomic analysis of antibiotics resistance in pathogens. MDPI, 220 pp. ISBN:978-3-0365-6524-8. 

Nogueira, T., Botelho, A., Bowler, L. & Inácio, J. (2022) Editorial: Evolution of Animal Microbial Communities in Response to Environmental Stress.

Nogueira, T., Botelho, A., Bowler, L. & Inácio, J. (Eds.) (2022) Evolution of Animal Microbial Communities in Response to Environmental Stress. Frontiers Research Topics. Frontiers Media SA. DOI:10.3389/978-2-88974-972-0.

Nogueira, T., Silva, D.G., Lopes, S. & Botelho, A. (2022) Database of Metagenomes of Sediments from Estuarine Aquaculture Farms in Portugal—AquaRAM Project Collection. 

Darmancier, H., Domingues, C.P.F., Rebelo, J.S., Amaro, A., Dionísio, F., Pothier, J., Serra, O. & Nogueira, T. (2022) Are Virulence and Antibiotic Resistance Genes Linked? A Comprehensive Analysis of Bacterial Chromosomes and Plasmids.

Silva, D.G., Domingues, C.P.F., Figueiredo, J.F., Dionisio, F., Botelho, A. & Nogueira, T. (2022) Estuarine Aquacultures at the Crossroads of Animal Production and Antibacterial Resistance: A Metagenomic Approach to the Resistome.

Domingues, C.P.F., Rebelo, J.S., Monteiro, F., Nogueira, T. & Dionisio, F. (2022) Harmful Behaviour through Plasmid Transfer: A Successful Evolutionary Strategy of Bacteria Harbouring Conjugative Plasmids.

Abade dos Santos, F.A., Portela, S.J., Nogueira, T., Carvalho, C.L., de Sousa, R. & Duarte, M.D. (2021) Harmless or Threatening? Interpreting the Results of Molecular Diagnosis in the Context of Virus-Host Relationships. 

Ponce, R. & Nogueira, T. (2021) O vírus da Gripe. Revista Ciência Elementar, 9(2). DOI:10.24927/rce2021.032.

Barbosa, J., Albano, H., Silva, B., Almeida, M.H., Nogueira, T. & Teixeira, P. (2021) Characterization of a Lactiplantibacillus plantarum R23 Isolated from Arugula by Whole-Genome Sequencing and Its Bacteriocin Production Ability. 

Duarte, M.& Nogueira, T. (Eds.)(2022) Animal and Human Coronaviruses: Evolution and pathogenicity of the virus and disease prevention. Zenodo. DOI:10.5281/zenodo.5710679.