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Curriculum Vitae Download •
Francisco Pina-Martins is conducting a Ph.D. in the PhD programme "Biologia e Ecologia das Alterações Globais" by the University of Lisbon and University of Aveiro starting in 2011 within the CoBiG² of cE3c. He is conducting the project "Analyses of the genomic variation to study cork oak evolution and adaptation: from past to future climatic changes", under the supervision of Octávio S. Paulo from cE3c, and Georgios Pappas of Universidade de Brasília. The Ph.D. project's main aims are: a) Study the evolutionary history of cork oak, resorting to SNP markers developed from NGS transcriptomic data; b) Study selective pressures on this species using a population genomics approach based on the set of genotyped SNPs; c) Perform association studies of genomic SNPs with environmental variables.
Pina-Martins, F., Silva, D.N., Fino, J. & Paulo, O.S. (2017) Structure_threader: an improved method for automation parallelization of programs structure, fastStructure and MavericK on multicore CPU systems.Molecular Ecology Resources, 17(6), e268-e274. DOI:10.1111/1755-0998.12702. (IF2016 7,332; Q1 Ecology)
Pina-Martins, F., Vieira, B.M., Seabra, S.G., Batista, D. & Paulo, O.S. (2016) 4Pipe4 – a 454 data analysis pipeline for SNP detection in datasets with no reference sequence or strain information.BMC Bioinformatics, 17, 41. DOI:10.1186/s12859-016-0892-1 (IF2016 2,448; Q1 Computer Science)
Rodrigues, A.S.B., Silva, S.E., Pina-Martins, F., Loureiro, J., Castro, M., Gharbi, K., Johnson, K.P., Dietrich, P., Borges, P.A.V., Quartau, J.A., Jiggins, C., Paulo, O.S. & Seabra, S.G. (2016) Assessing genotype-phenotype associations in three dorsal colour morphs in the meadow spittlebug Philaenus spumarius (L.) (Hemiptera: Aphrophoridae) using genomic and transcriptomic resources.BMC Genetics, 17(144), 1-16. DOI:10.1186/s12863-016-0455-5 (IF2016 2,266; Q3 Genetics & Heredity)