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Curriculum Vitae Download •
Francisco Pina-Martins is conducting a Ph.D. in the PhD programme "Biologia e Ecologia das Alterações Globais" by the University of Lisbon and University of Aveiro starting in 2011 within the CoBiG2 of cE3c. He is conducting the project "Analyses of the genomic variation to study cork oak evolution and adaptation: from past to future climatic changes", under the supervision of Octávio S. Paulo from cE3c, and Georgios Pappas of Universidade de Brasília. The Ph.D. project's main aims are: a) Study the evolutionary history of cork oak, resorting to SNP markers developed from NGS transcriptomic data; b) Study selective pressures on this species using a population genomics approach based on the set of genotyped SNPs; c) Perform association studies of genomic SNPs with environmental variables.
Pina-Martins, F., Silva, D.N., Fino, J. & Paulo, O.S. (2017) Structure_threader: an improved method for automation parallelization of programs structure, fastStructure and MavericK on multicore CPU systems.Molecular Ecology Resources, 17(6), e268-e274. DOI:10.1111/1755-0998.12702. (IF2017 7,059; Q1 Ecology)
Pina-Martins, F., Vieira, B.M., Seabra, S.G., Batista, D. & Paulo, O.S. (2016) 4Pipe4 – a 454 data analysis pipeline for SNP detection in datasets with no reference sequence or strain information.BMC Bioinformatics, 17, 41. DOI:10.1186/s12859-016-0892-1 (IF2016 2,448; Q1 Computer Science)
Rodrigues, A.S.B., Silva, S.E., Pina-Martins, F., Loureiro, J., Castro, M., Gharbi, K., Johnson, K.P., Dietrich, P., Borges, P.A.V., Quartau, J.A., Jiggins, C., Paulo, O.S. & Seabra, S.G. (2016) Assessing genotype-phenotype associations in three dorsal colour morphs in the meadow spittlebug Philaenus spumarius (L.) (Hemiptera: Aphrophoridae) using genomic and transcriptomic resources.BMC Genetics, 17(144), 1-16. DOI:10.1186/s12863-016-0455-5 (IF2016 2,266; Q3 Genetics & Heredity)
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